Using proper credentials from VariantMongoDBAdaptor
Original VCF line compressed using gzip during serialization to Mongo, and viceversa
Merge branch 'develop' into feature/vcf-lines
Merge branch 'develop' into feature/vcf-lines
Make 'variants' the default collection to query from VariantMongoDBAdaptor
Properly storing variant effects into Mongo using the new VariantEffect classes
Handle when no user and/or password are provided as Mongo configuration parameters
New method getSourceDownloadUrlByName(List<String>) in addition to getSourceDownloadUrlByName(String)
Merge branch 'develop' into feature/ga4gh
Added new option study-type to OpenCGAMain
New converters from/to DBObject for samples in a file, depending on these being stored in compressed or decompressed way. 2 classes have been created, but only one may be necessary because during queries, variants of both compression modes could be retrieved
Samples compressed (or not) storage will be handled from the sample class DBObjectToSamplesConverter
Samples storage not-compressed mode
Conflict fixed when merging develop
Samples compression depending on study type connected with the main application flow
Completed MongoDBAlignmentStorageManager.transform
Imrpoved IndexedAlignmentDBAdaptorTest
Added ASM package to pom.xml
Replaced QueryResponse/QueryResult by new versions.
Merge pull request #13 from roalva1/feature/newQueryResponse

Replaced QueryResponse/QueryResult by new versions.