barrnap 0.3: New formula

Barrnap predicts the location of 5S, 16S and 23S ribosomal RNA genes
in Bacterial and Archaeal genome sequences. It takes FASTA DNA
sequence as input, and write GFF3 as output.
prokka: Depends on barrnap
prodigal: Add DOI
prokka: Add DOI
snap: Fix the ZOE path

Add DOI
maker: Symlink gff3_merge
repeatmasker: Add instructions to caveats
repeatmodeler: Symlink BuildDatabase
prokka: Install the large database

Closes #800
sailfish: Add DOI
R: add path to OpenBLAS lib, without-accelerate option
OpenCV: support for --head install.

Closes #848.
Update to version 8.0.20

Closes #847.
Fix x11 dependency.

See Homebrew/homebrew#28096.
Fix x11 dependency guideline.

See Homebrew/homebrew#28096.

Closes #846.
libccd: collision detection between convex shapes

This is used by the dartsim and gazebo robotic simulators for
collision checking.

Closes #811.
consed 27.0: New formula

A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish,
Autoreport, Autoedit, and Align Reads To Reference Sequence)
edirect 1.70
CONTRIBUTING: add Table of Contents, adjust heading style
viennarna 2.1.7