Ensure and test that a proper exception is thrown (resulting in a
non-zero exit code)
Add root_sample_swa and root_sample_name to file provenance report
Add organism, processing, and parent sample targetting to the
file-provenance report end-points and the MetadataWS
Fix up error handling in WorkflowRunReporter
Fix up more error catching
Merge pull request #213 from SeqWare/feature/SEQWARE-1880

Feature/seqware 1880