Fix seg fault caused by referenceBegin of ssw alignment is -1
MosaikBuild quiet mode won't print out any msg.
MosaikAligner quiet mode won't print out any msg.
Version 2.2.14
typo: chrmosome (-omi option)
remove LDFLAGS = -W
Fix the conflict of opening compressed and uncompressed files
Version 2.2.17
-Wformat in fann/Makefile
-Wunused-result in fann/Makefile
Version 2.2.19
Fix the bug in CalculateMinimumBin: if (end == 0) end = begin;
Remove the falgs that are just added in
Merge https://github.com/wanpinglee/MOSAIK