Start of 64 bit genome locations
A little more work on longer genome locations
Mork work toward 64 bit genome locations.  Doesn't build, just a checkpoint.
Compiles, haven't run it yet
ran once
Merge branch 'dev' into bill
bugfix
Worked once for index build & single end (plus, found a bug in the old code & fixed it)
Refactored GenericFile gets:

* Added getchar() to the public interface
* Renamed the gets implementation to _gets_impl and made it protected
* gets is implemented by calling _gets_impl for GenericFile_HDFS and _Blob,
  and by calling stdio's fgets() for GenericFile_stdio
More work on 64 bit support
1.0dev.24: Custom allocator for overflow reads in PairedReadMatcher
Fixes to enable SNAP to link and build on *nix/Mac.
VS 2013 project files
Merge branch 'dev' of https://github.com/amplab/snap into dev
1.0dev.25: fix index build for very small genomes
Generate error messages rather than crashing for invalid keySize/seedLen combos in index build
Compile on Linux
Merge pull request #28 from fnothaft/build-fixes-nix

Build fixes for *nix
removed duplicate definition in Compat.cpp
Merge pull request #29 from amplab/dup-def

removed duplicate definition in Compat.cpp