Removing lvalue from Tabs
Javascrit for 'select all' checkboxes
New icon for internal links
Added link to species home page, on request of outreach
New module to replace TmpFile
Added transparent handling of gzipped files
Tidying up
Fleshed out write methods and did a bit more tidying
Checked and updated documentation
Added basic documentation to all methods
Added overview - won't document methods as it needs replacing!
added tooltip  text for 5/3' incomplete on transcript table
Only show link to transcript supporting evidence when there is actually some supporting evidence
Merge branch 'master' into feature/tools-dev