Updated cluster arguments
test_update for first mqr scripts
Add version number
AssembleIrysCluster.pl Version 1.2 

AssembleIrysCluster.pl Version 1.2 fixed a bug in listing split and adjusted bnx files
Update RefineAssembleIrysREADME.md
Updates for AssembleIrysCluster.pl Version 1.2
Add some parameters in triplicate to optArguments.xml
update format of assembly script
Update path to opt arguments
update cluster arguments not to clear parameters

Removed <flag attr="-clear"/> from clusterArguments.xml
Simplified prep_bnx.pl code
Cleaned up format of assembly command script
Update make_contigs_from_fasta.pl
Update make_contigs_from_fasta.pl
Update make_contigs_from_fasta.pl
add full path to box directory to assembly qc script
add Merge 0 n50 to assembly qc output
Fixing bug with length filtering
AssembleIrysCluster.pl v.1.3 AssembleIrys.pl v.1.2

AssembleIrysCluster.pl Version 1.3
Fixed bug in lowering minimum lengths. Returned optArguments.xml to
default parameters.

AssembleIrys.pl Version 1.2
Fixed bug in lowering minimum lengths
Merge pull request #53 from i5K-KINBRE-script-share/master

fixed bug in adjusting minimum length