Ignore namespaces when filling in an XMLAnnotation's Value

This prevents the xmlns on Value from being set to an empty string.
Location: only delegate to File.isHidden() on Windows

This bypasses substantial performance problems when calling isHidden()
on Mac OS X/Linux over NFS.  Fixes #6586, see #12027.
FormatReader: speed up getUsedFiles()

We can assume that each call to getSeriesUsedFiles(...) will contain an
array with no duplicates.  If there is only one series in the fileset,
then, we can speed up large filesets by removing the extra check for
duplicate files.

See #12027.
DICOM: ensure that getSeriesUsedFiles returns an array of unique paths
DICOM: fix file grouping so that path names are normalized

On Windows in particular, the list of pattern files often has extra path separator escaping, which prevents the
pattern files from being matched with the files from the directory listing.
Allow dist-matlab to run on Windows
DICOM: expand sequence reading to include known sequences

See QA 9184.
Exclude one non-sequence tag from sequence parsing
CellSens: fix off-by-ones in subresolution tile calculations
Flex: fix whitespace annoyances
Flex: fix the case where one field is stored in each file

See #11382 and
http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2014-March/002721.html
Revert "CZI: restrict dimension adjustment"

This reverts commit f8ce7b1e749fe7d85d7fac1d2d547861166d3d43.
Flex: one more fix for dimension adjustment

The extra check for a valid image count is not necessary if only one
file is present in the dataset.
Flex: correct channel indexing when there is not one name per plane
Revert "Revert "CZI: restrict dimension adjustment""

This reverts commit f6ebfd82805ed6175a1ed693da1a9e3c10cd6c91.
Imaris HDF: make sure that all resolutions have the same ZCT sizes

Fixes #12200.
MRC: fix handling of mode 16 data

Mode 16 denotes 8-bit RGB data, not 16-bit data.  See
https://trello.com/c/guQdSW8V/235-follow-ups-with-joaquin
Remove JENKINS_JOB variable and point at the release components
Add extlink for source directories and fix links across doc
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