new version working with PCCA
Merge branch 'release-0.2' into develop
removing egg
pcca functions go in this library
Merge branch 'pcca' of https://github.com/daviddesancho/BestMSM into pcca
added robust feature to PCCA
some changes in optim
some changes in optim
further changes to PCCA calculations
some more steps for encapsulating
PCCA working but for optimization
PCCA working but for optimization
Merge branch 'pcca' into develop
things working
working pfold calculation
Merge branch 'pfold' into develop
Merge branch 'master' of https://github.com/daviddesancho/BestMSM into visual
now we can write in dot format
Merge branch 'visual' into develop
changes in documentation