Big Commit: Integrated Most Components

Custom Parser:
added the code from Kevin’s branch into the class here

JSONCombiner:
integrated as a method in JSONParser.cs
no longer needed (will delete)

JSONParser:
completed and debugged the full implementation
tested against two mock files of file paths and java code
returns the appropriate data to the unity visualization component by
calling getAllResults(filePaths, codeFile)

To Dos:
Documentation
Clean up
Unit Tests