Warnings with -Wall fixed
Adds merge_seeds function
Fixes one seed
Fixes some CIGAR codes
Merge branch 'develop-2.0.1-beta' of https://github.com/opencb/hpg-aligner into develop-2.0.1-beta
Removes some debug messages
Updates submodule
Improves mapping by processing read flanks (start and end)
Fixes some CIGARs
Remove some files from Git and fixe one bug in sa_mapper_stage.c
Fixed conflicts in merge with develop-2.0.1-beta
Updates submodules
Merge branch 'develop-2.0.1-beta2' into develop