Fix ImageScope links to match the committed documentation
Updates for ImageJ docs &version history
Tidying conf.py
Better link, note on MATLAB & Mark's comment fix
Fixes suggested by Roger
Formatting menu items correctly
Update autogen scripts and templates for restructuring

The gen-formats-pages and gen-meta-support targets were also run, but
both resulted in no changes (since no new formats were introduced after
rc2).
change TeX Gyre font package so XeLaTeX can find it
Merge pull request #963 from mtbc/tex-gyre

change TeX Gyre font package so XeLaTeX can find it (rebased)
Merge pull request #961 from melissalinkert/rebased/develop/5.0.0-autogen

Update autogen scripts and templates for restructuring (rebased onto develop)
Merge pull request #954 from melissalinkert/rebased/develop/aperio-links

Fix ImageScope links to match the committed documentation (rebased onto develop)
Merge pull request #956 from sbesson/rebased/develop/5-release

Final BF doc updates for 5 release (rebased onto develop)
Add a few more things to the 5.0.0 version history
Merge pull request #965 from melissalinkert/rebased/develop/5.0.0-version-history

Add a few more things to the 5.0.0 version history (rebased onto develop)
Setting schema to 2013-10 for inprogress files
Adding stub transforms and sample files
Switch to the development schema
Switch maven to the development schema
Release inprogress as 2013-10-dev-1
Updating transforms to 2013-10-dev-1