dispatch dmat creation to a different function for each aligner
detect usearch executable and version and
in the midst of implementing usearch pairwise distances (realizing that
not all pairwise distances are returned)
parse usearch output for allpairs
filter_outliers returns a pandas dataframe
results are accumulated as pandas dataframes
add 'deenurp filter-outliers --detailed-seqinfo'
update changelog
don't run filter_outliers with usearch unless usearch6 is installed
add pandas, update other requirements
skip usearch tests if not available
a few comments
add wrap.vsearch_allpairs_files
- installs vsearch
- filter_outliers can use vsearch as an aligner
- bootstrap.sh downloads virtualenv source only if necessary
handle nan in distance matrix when identifying outliers
- be more consistent in the use of configuration variables
- update filter-outliers command line options
check vsearch version
use vsearch --allpairs_global
use first line of docstring for top-level help text
actually run tests for filter-outliers
update vsearch version
add ``deenurp pairwise-distances``