As for problem I've encountered:

1. You see from my comment that I had error as follows:

/usr/lib/gcc/arm-none-eabi/4.8.2/include/stdint.h:9:26: fatal error:
stdint.h: No such file or directory
# include_next 

2. So stdint.h file from my toolchain directory wants to do "#include_next <stdint.h>".
3. From this I figured that my toolchain wants to use system "stdint.h" file, but doesn't see it.
4. Next thing I did (very straightforward though, I know) is added "/usr/share" path to include search path in CFLAGS variable in global Makefile.