Merge pull request #18 from standage/master

Update check-gff3 to report counts
Merge pull request #19 from standage/master

Fixed bug with reporting all feature types
added -seqids, -ignore options (see help info), also added misfits printing based on relationships
misfit gene ids, options printing
small fix
Merge pull request #20 from jfdenton/master

gffTidy updates
gt validated misfit output with added gene lines, other fixes
fixor
Merge pull request #21 from jfdenton/master

fixes
Merge branch 'master' of https://github.com/BrendelGroup/AEGeAn