Re-arranged files and folders into a more appropriate structure. Setting up branches.

Signed-off-by: DGriffen <david.griffen@knights.ucf.edu>
Merge branch 'master' of https://github.com/Andalon/Super-NEAT-MA-RIO

Conflicts:
	Docs/Anji Docs/LICENSE.txt
	Docs/Anji Docs/README
	Docs/Anji Docs/RELEASE_NOTES
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	Docs/Anji Docs/_notes/neat_logo.gif.mno
	Docs/Anji Docs/docs/james_gecco04.pdf
	Docs/Anji Docs/docs/james_gecco05.pdf
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	Docs/Anji Docs/images/Thumbs.db
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	Docs/Mario Infinite Bros Docs/README.txt
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	Lib/Infinite Mario Bros/res/tiles.dat
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	Lib/Infinite Mario Bros/res/worldmap.png
	Lib/Infinite Mario Bros/src/com/mojang/mario/AppletLauncher.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/Art.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/BgRenderer.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/FrameLauncher.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/LevelRenderer.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/LevelScene.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/LoseScene.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/MapScene.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/MarioComponent.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/Recorder.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/Replayer.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/Scale2x.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/Scene.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/TitleScene.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/WinScene.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/level/BgLevelGenerator.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/level/ImprovedNoise.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/level/Level.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/level/LevelGenerator.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/level/SpriteTemplate.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/mapedit/LevelEditView.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/mapedit/LevelEditor.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/mapedit/TilePicker.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/BulletBill.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/CoinAnim.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/Enemy.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/FireFlower.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/Fireball.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/FlowerEnemy.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/Mario.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/Mushroom.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/Particle.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/Shell.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/Sparkle.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/Sprite.java
	Lib/Infinite Mario Bros/src/com/mojang/mario/sprites/SpriteContext.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/FakeSoundEngine.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/FixedSoundSource.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/SonarSoundEngine.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/SoundListener.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/SoundProducer.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/SoundSource.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/StereoSoundProducer.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/mixer/ListenerMixer.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/mixer/Sound.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/sample/SampleLoader.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/sample/SamplePlayer.java
	Lib/Infinite Mario Bros/src/com/mojang/sonar/sample/SonarSample.java
	Lib/anji_2_01.zip
	Lib/anji_2_01/LICENSE.txt
	Lib/anji_2_01/activate.bat
	Lib/anji_2_01/activate.sh
	Lib/anji_2_01/db/run.dtd
	Lib/anji_2_01/dpbalance_evaluate.sh
	Lib/anji_2_01/eval_image.bat
	Lib/anji_2_01/eval_image.sh
	Lib/anji_2_01/evaluate.sh
	Lib/anji_2_01/evolve-iterator.sh
	Lib/anji_2_01/evolve.bat
	Lib/anji_2_01/evolve.sh
	Lib/anji_2_01/images/original_matches/square.tif
	Lib/anji_2_01/images/original_mismatches/circle.tif
	Lib/anji_2_01/images/original_mismatches/triangle.tif
	Lib/anji_2_01/lib/anji.jar
	Lib/anji_2_01/lib/clibwrapper_jiio.jar
	Lib/anji_2_01/lib/hb16.jar
	Lib/anji_2_01/lib/jai_imageio.jar
	Lib/anji_2_01/lib/jakarta-regexp-1.3.jar
	Lib/anji_2_01/lib/jcommon.jar
	Lib/anji_2_01/lib/jfreechart.jar
	Lib/anji_2_01/lib/jgap.jar
	Lib/anji_2_01/lib/jmagick.jar
	Lib/anji_2_01/lib/junit.jar
	Lib/anji_2_01/lib/log4j.jar
	Lib/anji_2_01/lib/mlibwrapper_jai.jar
	Lib/anji_2_01/nevt/complexity/graphComplexity.xsl
	Lib/anji_2_01/nevt/complexity/graphComplexityRefresh.xsl
	Lib/anji_2_01/nevt/fitness/graphFitness.xsl
	Lib/anji_2_01/nevt/fitness/graphFitnessRefresh.xsl
	Lib/anji_2_01/nevt/run.dtd
	Lib/anji_2_01/nevt/species/graphSpecies.xsl
	Lib/anji_2_01/nevt/species/graphSpeciesRefresh.xsl
	Lib/anji_2_01/properties/dpbalance.properties
	Lib/anji_2_01/properties/eye.properties
	Lib/anji_2_01/properties/gomoku.properties
	Lib/anji_2_01/properties/gomoku_composite.properties
	Lib/anji_2_01/properties/roshambo.properties
	Lib/anji_2_01/properties/roshambo_single_elim.properties
	Lib/anji_2_01/properties/sigmoid_xor_stimuli.txt
	Lib/anji_2_01/properties/sigmoid_xor_targets.txt
	Lib/anji_2_01/properties/tanh_xor_boolean_targets.txt
	Lib/anji_2_01/properties/tanh_xor_stimuli.txt
	Lib/anji_2_01/properties/tanh_xor_targets.txt
	Lib/anji_2_01/properties/test.properties
	Lib/anji_2_01/properties/test_eye.properties
	Lib/anji_2_01/properties/test_tanh.properties
	Lib/anji_2_01/properties/test_xor.properties
	Lib/anji_2_01/properties/ttt.properties
	Lib/anji_2_01/properties/ttt_benchmark.properties
	Lib/anji_2_01/properties/ttt_double_elim.properties
	Lib/anji_2_01/properties/xor.properties
	Lib/anji_2_01/properties/xor_benchmark.properties
	Lib/anji_2_01/reset.bat
	Lib/anji_2_01/reset.sh
	Lib/anji_2_01/src/build.xml
	Lib/anji_2_01/src/com/anji/Copyright.java
	Lib/anji_2_01/src/com/anji/fingerprint/Classification.java
	Lib/anji_2_01/src/com/anji/fingerprint/Classifier.java
	Lib/anji_2_01/src/com/anji/fingerprint/ClassifierResult.java
	Lib/anji_2_01/src/com/anji/fingerprint/ConfusionMatrix.java
	Lib/anji_2_01/src/com/anji/fingerprint/Evaluator.java
	Lib/anji_2_01/src/com/anji/fingerprint/package.html
	Lib/anji_2_01/src/com/anji/floatingeye/AffinityListener.java
	Lib/anji_2_01/src/com/anji/floatingeye/AnjiNetFloatingEye.java
	Lib/anji_2_01/src/com/anji/floatingeye/AnjiNetFloatingEyeIdentifierFactory.java
	Lib/anji_2_01/src/com/anji/floatingeye/AnjiNetFloatingEyeImageIdentifier.java
	Lib/anji_2_01/src/com/anji/floatingeye/CompositeAffinityListener.java
	Lib/anji_2_01/src/com/anji/floatingeye/EyeCanvas.java
	Lib/anji_2_01/src/com/anji/floatingeye/EyeMovementParms.java
	Lib/anji_2_01/src/com/anji/floatingeye/EyePixelConnection.java
	Lib/anji_2_01/src/com/anji/floatingeye/FloatingEye.java
	Lib/anji_2_01/src/com/anji/floatingeye/FloatingEyeDisplay.java
	Lib/anji_2_01/src/com/anji/floatingeye/FloatingLocation.java
	Lib/anji_2_01/src/com/anji/floatingeye/LastAffinityListener.java
	Lib/anji_2_01/src/com/anji/floatingeye/LocationXConnection.java
	Lib/anji_2_01/src/com/anji/floatingeye/LocationYConnection.java
	Lib/anji_2_01/src/com/anji/floatingeye/LocationZConnection.java
	Lib/anji_2_01/src/com/anji/floatingeye/MaxAffinityListener.java
	Lib/anji_2_01/src/com/anji/floatingeye/SurfaceCanvas.java
	Lib/anji_2_01/src/com/anji/floatingeye/ThetaConnection.java
	Lib/anji_2_01/src/com/anji/floatingeye/WeightedAffinityListener.java
	Lib/anji_2_01/src/com/anji/floatingeye/package.html
	Lib/anji_2_01/src/com/anji/gomoku/GomokuBoard.java
	Lib/anji_2_01/src/com/anji/gomoku/GomokuBtrPlayer.java
	Lib/anji_2_01/src/com/anji/gomoku/GomokuGame.java
	Lib/anji_2_01/src/com/anji/gomoku/GomokuNeuralNetPlayer.java
	Lib/anji_2_01/src/com/anji/gomoku/GomokuRandomPlayer.java
	Lib/anji_2_01/src/com/anji/gomoku/GomokuScanningNeuralNetPlayer.java
	Lib/anji_2_01/src/com/anji/gomoku/package.html
	Lib/anji_2_01/src/com/anji/imaging/AreaAvgBufferedImageTransformer.java
	Lib/anji_2_01/src/com/anji/imaging/BufferedImageTransformer.java
	Lib/anji_2_01/src/com/anji/imaging/CanvasEnlarger.java
	Lib/anji_2_01/src/com/anji/imaging/CardinalDirection.java
	Lib/anji_2_01/src/com/anji/imaging/CoordinateTranslator.java
	Lib/anji_2_01/src/com/anji/imaging/CoordinateTranslatorFactory.java
	Lib/anji_2_01/src/com/anji/imaging/DefaultBufferedImageTransformer.java
	Lib/anji_2_01/src/com/anji/imaging/DoubleLocation2D.java
	Lib/anji_2_01/src/com/anji/imaging/EvaluateImageIdentifier.java
	Lib/anji_2_01/src/com/anji/imaging/Identifier.java
	Lib/anji_2_01/src/com/anji/imaging/IdentifyImageFitnessFunction.java
	Lib/anji_2_01/src/com/anji/imaging/ImageBinarizer.java
	Lib/anji_2_01/src/com/anji/imaging/ImageGrabber.java
	Lib/anji_2_01/src/com/anji/imaging/ImageNormalizer.java
	Lib/anji_2_01/src/com/anji/imaging/ImageRandomizer.java
	Lib/anji_2_01/src/com/anji/imaging/ImageTransformer.java
	Lib/anji_2_01/src/com/anji/imaging/IntLocation2D.java
	Lib/anji_2_01/src/com/anji/imaging/JMagickSurface.java
	Lib/anji_2_01/src/com/anji/imaging/Java2DSurface.java
	Lib/anji_2_01/src/com/anji/imaging/MagickImageTransformer.java
	Lib/anji_2_01/src/com/anji/imaging/RangeTranslator.java
	Lib/anji_2_01/src/com/anji/imaging/RangeTranslatorFactory.java
	Lib/anji_2_01/src/com/anji/imaging/Surface.java
	Lib/anji_2_01/src/com/anji/imaging/TransformParameters.java
	Lib/anji_2_01/src/com/anji/imaging/package.html
	Lib/anji_2_01/src/com/anji/integration/Activator.java
	Lib/anji_2_01/src/com/anji/integration/ActivatorTranscriber.java
	Lib/anji_2_01/src/com/anji/integration/AnjiActivator.java
	Lib/anji_2_01/src/com/anji/integration/AnjiNetTranscriber.java
	Lib/anji_2_01/src/com/anji/integration/AnjiRequiredException.java
	Lib/anji_2_01/src/com/anji/integration/ChromosomeToNetworkXml.java
	Lib/anji_2_01/src/com/anji/integration/ConsoleLogEventListener.java
	Lib/anji_2_01/src/com/anji/integration/ErrorFunction.java
	Lib/anji_2_01/src/com/anji/integration/ErrorRateCounter.java
	Lib/anji_2_01/src/com/anji/integration/ExponentialTargetFitnessFunction.java
	Lib/anji_2_01/src/com/anji/integration/Generation.java
	Lib/anji_2_01/src/com/anji/integration/LogEventListener.java
	Lib/anji_2_01/src/com/anji/integration/PersistenceEventListener.java
	Lib/anji_2_01/src/com/anji/integration/PresentationEventListener.java
	Lib/anji_2_01/src/com/anji/integration/RandomFitnessFunction.java
	Lib/anji_2_01/src/com/anji/integration/SimpleSelector.java
	Lib/anji_2_01/src/com/anji/integration/TargetFitnessFunction.java
	Lib/anji_2_01/src/com/anji/integration/Transcriber.java
	Lib/anji_2_01/src/com/anji/integration/TranscriberException.java
	Lib/anji_2_01/src/com/anji/integration/XmlPersistableChromosome.java
	Lib/anji_2_01/src/com/anji/integration/XmlPersistableRun.java
	Lib/anji_2_01/src/com/anji/integration/package.html
	Lib/anji_2_01/src/com/anji/neat/AddConnectionMutationOperator.java
	Lib/anji_2_01/src/com/anji/neat/AddNeuronMutationOperator.java
	Lib/anji_2_01/src/com/anji/neat/ConnectionAllele.java
	Lib/anji_2_01/src/com/anji/neat/ConnectionGene.java
	Lib/anji_2_01/src/com/anji/neat/Evolver.java
	Lib/anji_2_01/src/com/anji/neat/NeatActivator.java
	Lib/anji_2_01/src/com/anji/neat/NeatChromosomeUtility.java
	Lib/anji_2_01/src/com/anji/neat/NeatConfiguration.java
	Lib/anji_2_01/src/com/anji/neat/NeatCrossoverReproductionOperator.java
	Lib/anji_2_01/src/com/anji/neat/NeatIdMap.java
	Lib/anji_2_01/src/com/anji/neat/NeatTargetFitnessFunction.java
	Lib/anji_2_01/src/com/anji/neat/NeuronAllele.java
	Lib/anji_2_01/src/com/anji/neat/NeuronGene.java
	Lib/anji_2_01/src/com/anji/neat/NeuronType.java
	Lib/anji_2_01/src/com/anji/neat/PruneMutationOperator.java
	Lib/anji_2_01/src/com/anji/neat/RemoveConnectionMutationOperator.java
	Lib/anji_2_01/src/com/anji/neat/SingleTopologicalMutationOperator.java
	Lib/anji_2_01/src/com/anji/neat/WeightMagnitudeComparator.java
	Lib/anji_2_01/src/com/anji/neat/WeightMutationOperator.java
	Lib/anji_2_01/src/com/anji/neat/package.html
	Lib/anji_2_01/src/com/anji/nn/ActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/ActivationFunctionFactory.java
	Lib/anji_2_01/src/com/anji/nn/ActivationFunctionType.java
	Lib/anji_2_01/src/com/anji/nn/AnjiNet.java
	Lib/anji_2_01/src/com/anji/nn/BiasConnection.java
	Lib/anji_2_01/src/com/anji/nn/CacheNeuronConnection.java
	Lib/anji_2_01/src/com/anji/nn/ClampedLinearActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/Connection.java
	Lib/anji_2_01/src/com/anji/nn/EvSailSigmoidActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/InverseAbsActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/LinearActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/Neuron.java
	Lib/anji_2_01/src/com/anji/nn/NeuronConnection.java
	Lib/anji_2_01/src/com/anji/nn/Pattern.java
	Lib/anji_2_01/src/com/anji/nn/RandomConnection.java
	Lib/anji_2_01/src/com/anji/nn/RecurrencyPolicy.java
	Lib/anji_2_01/src/com/anji/nn/SigmoidActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/SignedClampedLinearActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/SignedStepActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/StepActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/StepHourglassConnection.java
	Lib/anji_2_01/src/com/anji/nn/TanhActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/TanhCubicActivationFunction.java
	Lib/anji_2_01/src/com/anji/nn/package.html
	Lib/anji_2_01/src/com/anji/persistence/FilePersistence.java
	Lib/anji_2_01/src/com/anji/persistence/HibernatePersistence.java
	Lib/anji_2_01/src/com/anji/persistence/Persistence.java
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	Lib/anji_2_01/src/com/anji/polebalance/DoublePoleBalanceEvaluator.java
	Lib/anji_2_01/src/com/anji/polebalance/DoublePoleBalanceFitnessFunction.java
	Lib/anji_2_01/src/com/anji/polebalance/PoleBalanceCanvas.java
	Lib/anji_2_01/src/com/anji/polebalance/PoleBalanceDisplay.java
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	Lib/anji_2_01/src/com/anji/roshambo/AnjiNetRoshamboPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/AnjiNetScanningRoshamboPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/Coin.java
	Lib/anji_2_01/src/com/anji/roshambo/CopyingPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/EnigmaPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/GnobotPlayer.java
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	Lib/anji_2_01/src/com/anji/roshambo/JustRockPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/MarshalbotPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/MohammedkaaschPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/Muto5Player.java
	Lib/anji_2_01/src/com/anji/roshambo/OneTrackMindPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/RandomPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/RoshamboGame.java
	Lib/anji_2_01/src/com/anji/roshambo/RoshamboPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/RoshamboPlayerTranscriber.java
	Lib/anji_2_01/src/com/anji/roshambo/RotatingPlayer.java
	Lib/anji_2_01/src/com/anji/roshambo/Tris3Player.java
	Lib/anji_2_01/src/com/anji/roshambo/UrzaPlayer.java
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	Lib/anji_2_01/src/com/anji/run/Domain.java
	Lib/anji_2_01/src/com/anji/run/Population.java
	Lib/anji_2_01/src/com/anji/run/Representation.java
	Lib/anji_2_01/src/com/anji/run/Run.java
	Lib/anji_2_01/src/com/anji/run/package.html
	Lib/anji_2_01/src/com/anji/tournament/Bracket.java
	Lib/anji_2_01/src/com/anji/tournament/CompositeTournament.java
	Lib/anji_2_01/src/com/anji/tournament/DirectTournament.java
	Lib/anji_2_01/src/com/anji/tournament/DoubleEliminationTournament.java
	Lib/anji_2_01/src/com/anji/tournament/Game.java
	Lib/anji_2_01/src/com/anji/tournament/KRandomOppsTournament.java
	Lib/anji_2_01/src/com/anji/tournament/Player.java
	Lib/anji_2_01/src/com/anji/tournament/PlayerResults.java
	Lib/anji_2_01/src/com/anji/tournament/PlayerResultsScoreComparator.java
	Lib/anji_2_01/src/com/anji/tournament/PlayerStats.java
	Lib/anji_2_01/src/com/anji/tournament/PlayerTranscriber.java
	Lib/anji_2_01/src/com/anji/tournament/ScoringWeights.java
	Lib/anji_2_01/src/com/anji/tournament/SimpleTournament.java
	Lib/anji_2_01/src/com/anji/tournament/SingleEliminationTournament.java
	Lib/anji_2_01/src/com/anji/tournament/Tournament.java
	Lib/anji_2_01/src/com/anji/tournament/TournamentFitnessFunction.java
	Lib/anji_2_01/src/com/anji/tournament/package.html
	Lib/anji_2_01/src/com/anji/ttt/Board.java
	Lib/anji_2_01/src/com/anji/ttt/BoardPlayer.java
	Lib/anji_2_01/src/com/anji/ttt/HumanPlayer.java
	Lib/anji_2_01/src/com/anji/ttt/TttBadPlayer.java
	Lib/anji_2_01/src/com/anji/ttt/TttBestPlayer.java
	Lib/anji_2_01/src/com/anji/ttt/TttBoard.java
	Lib/anji_2_01/src/com/anji/ttt/TttCenterPlayer.java
	Lib/anji_2_01/src/com/anji/ttt/TttForkablePlayer.java
	Lib/anji_2_01/src/com/anji/ttt/TttGame.java
	Lib/anji_2_01/src/com/anji/ttt/TttNeuralNetPlayer.java
	Lib/anji_2_01/src/com/anji/ttt/TttNineByOneNeuralNetPlayer.java
	Lib/anji_2_01/src/com/anji/ttt/TttRandomPlayer.java
	Lib/anji_2_01/src/com/anji/ttt/TttRotatingNeuralNetPlayer.java
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	Lib/anji_2_01/src/com/anji/util/Configurable.java
	Lib/anji_2_01/src/com/anji/util/DummyBulkFitnessFunction.java
	Lib/anji_2_01/src/com/anji/util/DummyConfiguration.java
	Lib/anji_2_01/src/com/anji/util/DummyReproductionOperator.java
	Lib/anji_2_01/src/com/anji/util/Properties.java
	Lib/anji_2_01/src/com/anji/util/Randomizer.java
	Lib/anji_2_01/src/com/anji/util/Reset.java
	Lib/anji_2_01/src/com/anji/util/package.html
	Lib/anji_2_01/src/examples/MinimizingMakeChange.java
	Lib/anji_2_01/src/examples/MinimizingMakeChangeFitnessFunction.java
	Lib/anji_2_01/src/org/jgap/Allele.java
	Lib/anji_2_01/src/org/jgap/BulkFitnessFunction.java
	Lib/anji_2_01/src/org/jgap/Chromosome.java
	Lib/anji_2_01/src/org/jgap/ChromosomeFitnessComparator.java
	Lib/anji_2_01/src/org/jgap/ChromosomeMaterial.java
	Lib/anji_2_01/src/org/jgap/Configuration.java
	Lib/anji_2_01/src/org/jgap/CrossoverReproductionOperator.java
	Lib/anji_2_01/src/org/jgap/FitnessFunction.java
	Lib/anji_2_01/src/org/jgap/Gene.java
	Lib/anji_2_01/src/org/jgap/Genotype.java
	Lib/anji_2_01/src/org/jgap/IdFactory.java
	Lib/anji_2_01/src/org/jgap/InvalidConfigurationException.java
	Lib/anji_2_01/src/org/jgap/InvalidConfigurationRuntimeException.java
	Lib/anji_2_01/src/org/jgap/MutationOperator.java
	Lib/anji_2_01/src/org/jgap/NaturalSelector.java
	Lib/anji_2_01/src/org/jgap/ReproductionOperator.java
	Lib/anji_2_01/src/org/jgap/SpeciationParms.java
	Lib/anji_2_01/src/org/jgap/Specie.java
	Lib/anji_2_01/src/org/jgap/UnsupportedRepresentationException.java
	Lib/anji_2_01/src/org/jgap/event/EventManager.java
	Lib/anji_2_01/src/org/jgap/event/GeneticEvent.java
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	Lib/anji_2_01/src/org/jgap/impl/BooleanAllele.java
	Lib/anji_2_01/src/org/jgap/impl/ChromosomePool.java
	Lib/anji_2_01/src/org/jgap/impl/CloneReproductionOperator.java
	Lib/anji_2_01/src/org/jgap/impl/DefaultConfiguration.java
	Lib/anji_2_01/src/org/jgap/impl/IntegerAllele.java
	Lib/anji_2_01/src/org/jgap/impl/Pool.java
	Lib/anji_2_01/src/org/jgap/impl/WeightedRouletteSelector.java
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	Lib/anji_2_01/test/nevt/fitness/fitness.xml
	Lib/anji_2_01/test/nevt/run.dtd
	Lib/anji_2_01/test/nevt/species/species.xml
	Lib/anji_2_01/test/src/com/anji/fingerprint/test/ClassifierResultTest.java
	Lib/anji_2_01/test/src/com/anji/floatingeye/test/AnjiNetFloatingEyeTest.java
	Lib/anji_2_01/test/src/com/anji/floatingeye/test/EyePixelConnectionTest.java
	Lib/anji_2_01/test/src/com/anji/floatingeye/test/FloatingEyeTest.java
	Lib/anji_2_01/test/src/com/anji/floatingeye/test/FloatingEyeTestDriver.java
	Lib/anji_2_01/test/src/com/anji/floatingeye/test/TestAnjiNet.java
	Lib/anji_2_01/test/src/com/anji/floatingeye/test/TestNeuron.java
	Lib/anji_2_01/test/src/com/anji/imaging/test/CoordinateTranslatorTest.java
	Lib/anji_2_01/test/src/com/anji/imaging/test/ImageNormalizerTest.java
	Lib/anji_2_01/test/src/com/anji/imaging/test/ImageRandomizerTest.java
	Lib/anji_2_01/test/src/com/anji/imaging/test/Java2DSurfaceTest.java
	Lib/anji_2_01/test/src/com/anji/integration/test/ActivatorTest.java
	Lib/anji_2_01/test/src/com/anji/integration/test/ConsoleLogEventListenerTest.java
	Lib/anji_2_01/test/src/com/anji/integration/test/PersistenceEventListenerTest.java
	Lib/anji_2_01/test/src/com/anji/integration/test/SimpleSelectorTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/AddConnectionMutationOperatorTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/AddNeuronMutationOperatorTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/AnjiTranscriberTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/ConnectionGeneTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/EvolverTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/NeatChromosomeUtilityTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/NeatConfigurationTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/NeatCrossoverReproductionOperatorTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/NeuronGeneTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/PruneMutationOperatorTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/RemoveConnectionMutationOperatorTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/TargetFitnessFunctionTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/TestChromosomeFactory.java
	Lib/anji_2_01/test/src/com/anji/neat/test/TestNeatConfigurationFactory.java
	Lib/anji_2_01/test/src/com/anji/neat/test/TranscriberTest.java
	Lib/anji_2_01/test/src/com/anji/neat/test/WeightMutationOperatorTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/AnjiActivatorTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/AnjiNetTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/EvSailSigmoidActivationFunctionTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/InverseAbsActivationFunctionTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/LinearActivationFunctionTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/MeasureNetTimingTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/NeuronConnectionTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/NeuronTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/PatternTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/SigmoidActivationFunctionTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/StepHourglassConnectionTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/TanhActivationFunctionTest.java
	Lib/anji_2_01/test/src/com/anji/nn/test/TanhCubicActivationFunctionTest.java
	Lib/anji_2_01/test/src/com/anji/persistence/test/FilePersistenceTest.java
	Lib/anji_2_01/test/src/com/anji/roshambo/test/AnjiNetRoshamboPlayerTest.java
	Lib/anji_2_01/test/src/com/anji/test/Master.java
	Lib/anji_2_01/test/src/com/anji/tournament/test/CompositeTournamentTest.java
	Lib/anji_2_01/test/src/com/anji/tournament/test/DirectTournamentTest.java
	Lib/anji_2_01/test/src/com/anji/tournament/test/DoubleEliminationTournamentTest.java
	Lib/anji_2_01/test/src/com/anji/tournament/test/GameResultsTest.java
	Lib/anji_2_01/test/src/com/anji/tournament/test/KRandomOppsTournamentTest.java
	Lib/anji_2_01/test/src/com/anji/tournament/test/PlayerResultsScoreComparatorTest.java
	Lib/anji_2_01/test/src/com/anji/tournament/test/SingleEliminationTournamentTest.java
	Lib/anji_2_01/test/src/com/anji/tournament/test/TestGame.java
	Lib/anji_2_01/test/src/com/anji/util/test/PropertiesTest.java
	Lib/anji_2_01/test/src/org/jgap/impl/test/CloneReproductionOperatorTest.java
	Lib/anji_2_01/test/src/org/jgap/impl/test/IntegerAlleleTest.java
	Lib/anji_2_01/test/src/org/jgap/impl/test/WeightedRouletteSelectorTest.java
	Lib/anji_2_01/test/src/org/jgap/test/ChromosomeTest.java
	Lib/anji_2_01/test/src/org/jgap/test/ConfigurationTest.java
	Lib/anji_2_01/test/src/org/jgap/test/CrossoverReproductionOperatorTest.java
	Lib/anji_2_01/test/src/org/jgap/test/DummyFitnessFunction.java
	Lib/anji_2_01/test/src/org/jgap/test/DummyMutationOperator.java
	Lib/anji_2_01/test/src/org/jgap/test/GenotypeTest.java
	Lib/anji_2_01/test/src/org/jgap/test/IdFactoryTest.java
	Lib/anji_2_01/test/src/org/jgap/test/Master.java
	Lib/anji_2_01/test/src/org/jgap/test/MutationOperatorTest.java
	Lib/anji_2_01/test/src/org/jgap/test/SpecieTest.java