turned off cache loading by default
Added MCC13 and MCC26 cell lines
changed class name of UISO to variant
changed to using parametric prior when running combat
Changed to use variant instead of UISO class
Changed color for UISO points in figure 1B
Changed file names to match figure number in output for saving images
Changed to using Variant instead of UISO
Changed to using Variant instead of UISO
Renamed from sky.tsv
changed table s3 info to reflect new variant cell lines
moved to str.tsv
added new cell lines and markers
changed misnamed vars and results called SKY to STR, added new cols of data for STR data for MCC13/MCC26
Added script ot do diff expr of only tumor samples.
Added pri vs met, stage code clinical params
Added table S7 for reporting on diff expr on clinical params in MCC tumor samples
Updated column names.
cache eset for tumors only.
Reorganized to move diff expr table to first position.