Merge pull request #1973 from snoopycrimecop/merge/dev_4_4/submodules

Update dev_4_4 submodules
Add missing log file entry.

Entry got removed by mistake.
Merge pull request #1978 from jburel/editor-start

editor start
Remove deprecated --use-mirrors
Remove flake8 --use-mirrors
Merge pull request #2062 from sbesson/rebased/dev_4_4/travis_pypi

Travis: do not use --use-mirrors  (rebased onto dev_4_4)
Update OMERO-homebrew-install.sh to install archived formulas
Use official install command
Use brew tap --repair to re-symlink tapped formulas
Fix call to brew tap --repair
Remove extra BREW_OPTS
Merge pull request #2079 from sbesson/11891_homebrew_archive

Update OMERO-homebrew-install.sh to install archived formulas
Passes channel configuration to Make_Movie (see #12036)

Depends on https://github.com/ome/scripts/pull/67 (see #12037)
Set default socket timeout correctly (Fixes #12097)

Python socket timeouts are specified in seconds as floating point.  This
commit sets the default timeout to a more reasonable 3 seconds, allows
the specification of a floating point timeout value, removes the
assumption that the timeout is specified in milliseconds and documents
all of the aforementioned.
Support for configuring the upgrade check URL (See #12097)

This commit adds configurability to the upgrade check URL via the
OMERO.web configuration mechanism.  Upgrade checks in OMERO.web can now
be disabled by running:

    bin/omero config set omero.web.upgrades_url ''
Use existing "omero.upgrades.url" configuration option
Bugfix: Weird behaviour after switching users

After switching user new service adapater instances were created but never
passed on to the registry.
Updated copyright date
Using new ChannelsExtended arg to the Make_Movie script
Fix CLI plugins to comply with PEP8 1.5.0