updated rrmatch
started to reconstruct the source tree
removed unnecessary files
updated python binding source tree
updated test setups for python bindings
moved a sample in gillespie_python
added submodules, ode, bd and lattice, to CMakeLists.txt
added submodules, ode, bd and lattice, to python/setup.py
Update Dockerfile
clean-up and renamed samples in python
rearanged python libraries
moved and removed legacy files
updated Python unit tests
use cmake
moved python/ecell4 into python/lib
removed waf
removed wscript more
added future implementation candidates
Merge branch 'rulebase' into fix_srctree_new

Conflicts:
	ecell4/core/CMakeLists.txt
	ecell4/egfrd/epdp
modified a branch in Dockerfile