Fix issue #41 -- reverse complement minus strand HLA genes so they can be properly interpreted. Warning: this is a hack and should be replaced with properly configured tool where filtered regions include the strand (a la GFF or HML)
Merge pull request #55 from ckennedy-nmdp/fix-bug-41

Fix issue #41 -- reverse complement minus strand HLA genes so they can b...
Fix bug #56, which is caused by improper formatting of regions files for filtering -- in this case spaces instead of tabs between index and coordinate fields produced an ArrayOutOfBoundsException. Sometimes formatting issues arise when copying files around. I put an error message into the code (Mark will have to reformat the regions files in /mnt/common/)
Take Michael's suggestion and use '\s+' to split -- simpler, better
Merge pull request #57 from ckennedy-nmdp/bug56

Fix bug #56, which is caused by improper formatting of regions files for...