Updating msbayes perl scripts.

Updating the ``dpp-msbayes.pl`` and ``msbayes.pl`` perl scripts in all
of the bin sub-folders. These versions from the dpp-msbayes package fix
a rounding issue when calculating the variance of divergence times.
Rounding error often led to negative variances when there was one
divergence event, which caused an error when calculating the CV (square
root of negative number).