Merge branch 'release/1.4.3' into develop
bump to ver 1.5.0a1
Adds cli for adding a project
Adds cli for adding a sample, updates project cli
Adds cli for adding an alignment, updates sample cli
bumps to ver 1.5.0a2
Updates subtraction to auto create alignment if not found in db
adds intellij files to ignore
fixes #42 - was trying to access align as a dict instead of object
added gra option to subtraction
added environment variables for running gra
added gra to subtraction and fixed the bug when reading the xeno file
added a file for calculating gra using third party software readscan that needs to be installed (see the /etc directory)
changed the filtering approach / no collapsing of FASTQ files only filtering (single, pair-end)
allow mapped reads to be inserted into the database
news
Added fix to skip authentication when no password is set
Initial work on testing. I’m trying to get TDD to a point where I can actually develop
Added exit status for errors
More testing added to detect duplicate samples, along with integrate the sample identifier references needed by the new web application schema