update ipynb with new blast algorithm and global alignment comparisons
update notebooks
update notebooks
update notebooks
drop graph figures
update sequencing section
update methods for single reference assembly
include family-wise snp information
remove unused figure for mapping/assembly performance
Merge branch 'cf'
Merge branch 'master' of https://github.com/aeckert2/foxtail_linkage into ae
update notebook module
merge from ae
Merge branch 'cf'
read stats
update notebooks
Merge branch 'cf'
update sequence analysis

read numbers
read lengths
assembly stats
update notebooks
Merge branch 'cf'