Added addDomains function to be used in the constructor, but left commented out just in case
Added addDomains function at the end and put it where it might be used in the constructor
Added a vector of Domains as a private member with a function for adding Domains
Domain class to be used as member of Sequence object, has basic members and accessor methods
Text file with data from Aaron on the domains of various proteins
Added linking to Domain class
Merge branch 'master' of ssh://github.com/FindKim/SequenceAlignment

Conflicts:
	ExtractSequence.cpp
	ExtractSequence.h
	Sequence.h
	makefile