Initial commit
Migrated the whole project from svn to git.
Added the main Makefile and changed a few unrelated settings.
Temporarily hardcoded paths to smithlab_cpp code base.
Removed one version of p-value correlation correction.
Added licenses to a bunch of files.
Removed some headers and now redundant functions.
Removed sublime project files and made some small changes to Makefiles.
Performed a major update to adjust module. The chief change is a new data structure that reduces memory consumption.
Added smithlab_cpp and bin folder.
Updated the Makefiles to correctly initialize SMITHLAB_CPP.
Expanded readme file.
Added utilities to merge methylomes into a proportion table and to split a proporition table.
Made small code touch-ups.
Improved the README and fixed a bug affecting design files with extra blank lines.
Minor adjustment to put an endline character at the end of the output.
removed smithlab_cpp folder
Added smithlab_cpp as a submodule.
fixed a typo Lunux -> Linux
Merge pull request #1 from wenzhenl/patch-1

Merged.