Added skeleton for ParsEval text reports
Filling out AgnCompareTextReportVisitor implementation
Reinstated the cutoff for clique pairs in comparative analysis
Added unique transcript (clique) IDs to text report
Changes to facilitate summary-only mode
First stab at documenting iLoci
Minor aesthetic change
Addresses #92, but still untested.
New ID scheme for iLocus stream
New ID scheme for locus stream
Closes #93.
Implemented gene/transcript reporting for iLoci in refactor stream
Refactoring last commit
Merge pull request #28 from standage/refactor

New ID scheme