Added FilterOrthoMCLGroups.py to repository
Added functions to filter out bad groups and write good groups to an output file
Added MakeCoreGenomeAlignment.py to repository
Changed MakeCoreGenomeAlignment to an ipython script
Added function to align fasta files with MAFFT
Added function to concatenate alignments with biopython
Added function to make unaligned fasta files for protein groups
Fixed a few bugs
Added function to trim alignments before concatenating them
Added a sort to group output, so each group would have the same order
Merge branch 'master' of https://github.com/tatumdmortimer/core-genome-alignment