reference both the Trac tickets
adjust check of group IDs across annotation links
merge develop -D none -I breaking -E exclude: PR 2401 (fix #12242: delete bad annotation links and annotations)
merge develop -D none -I breaking -E exclude

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 2399 bpindelski 'Assist #11660: Add method for user creation based on LDAP username (rebased onto develop)' (user: bpindelski)
  # PR 2413 joshmoore 'Close ImportProcessPrx instances (Fix #12233) (rebased onto develop)' (user: joshmoore)
  # PR 2336 knabar 'New tagging dialog' (user: knabar)
  # PR 2363 dominikl 'Java Gateway API' (label: exclude)
  # PR 2127 dpwrussell 'Working view to email announcements to selected users, groups, email addresses and/or all users' (user: dpwrussell)
  # PR 2367 dpwrussell 'Move webadmin navigation to base template' (user: dpwrussell)
  # PR 2394 joshmoore 'Call updateObjects/updateReferences in a loop (rebased onto develop)' (user: joshmoore)
  # PR 2411 snoopycrimecop 'Update develop submodules' (user: snoopycrimecop)
  # PR 2269 dominikl 'ROI improvements' (user: dominikl)
  # PR 2377 sbesson 'OMERO.matlab: add utility function to load channels (rebased onto develop)' (user: sbesson)
  # PR 2256 will-moore 'Tablet drag handling' (user: will-moore)
  # PR 2403 aleksandra-tarkowska 'Send email' (user: aleksandra-tarkowska)
  # PR 2414 hflynn 'Delete superfluous READMEs (rebased onto develop)' (user: hflynn)
  # PR 2398 bpindelski 'CLI download looks for resources in all user groups (fix #12146). (rebased onto develop)' (user: bpindelski)
  # PR 2182 joshmoore 'Read only flag' (user: joshmoore)
  # PR 2357 rleigh-dundee 'Generate Python API reference with Sphinx' (user: rleigh-dundee)
  # PR 2258 will-moore 'Truncate js tree dynamically 12161' (user: will-moore)
  # PR 2412 qidane 'Extra annotations' (exclude comment)
  # PR 2362 will-moore 'Remove .jy from script names' (user: will-moore)
  # PR 2391 jburel 'Imagej omero (rebased onto develop)' (user: jburel)
Already up-to-date.

Merged PRs:
  # PR 2401 mtbc 'fix #12242: delete bad annotation links and annotations'

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1075 hflynn 'Remove dead bitmap link (rebased onto develop)' (user: hflynn)
  # PR 816 melissalinkert 'Add support for multi-channel Volocity Clipping datasets' (user: melissalinkert)
  # PR 981 melissalinkert 'Ignore namespaces when filling in an XMLAnnotation's Value' (user: melissalinkert)
  # PR 528 melissalinkert 'Tile performance improvements for VMS and NDPI' (user: melissalinkert)
  # PR 1049 melissalinkert 'DICOM: fix file grouping so that path names are normalized (rebased onto develop)' (user: melissalinkert)
  # PR 1054 qidane 'Additional annotation points throughout the model' (exclude comment)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 1076 hflynn 'Adding CONTRIBUTING file to BF repo (rebased onto develop)' (user: hflynn)
  # PR 1028 melissalinkert 'Large fileset performance improvements (rebased onto develop)' (user: melissalinkert)
  # PR 983 melissalinkert 'Woolz: make sure the service is initialized when calling openBytes (rebased onto develop)' (user: melissalinkert)
  # PR 1060 melissalinkert 'Allow dist-matlab to run on Windows' (user: melissalinkert)
  # PR 1070 melissalinkert 'DICOM: expand sequence reading to include known sequences (rebased onto develop)' (user: melissalinkert)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 978 berl 'Add writing of .v3draw format for easy loading with Vaa3D.' (user: berl)
Updating f247b30..fd9b562
Merged PRs (fast-forward):
  # PR 1073 rleigh-dundee 'docs: Delegate all sphinx Makefile targets to ant'

Repository: ome/scripts
Excluded PRs:
  # PR 76 will-moore 'Fix 'No permissions' error in Make_Movie.py. See #12227' (user: will-moore)
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Excluded PRs:
  # PR 760 rleigh-dundee 'Make Ice 3.4 the minimum supported version' (user: rleigh-dundee)
  # PR 758 hflynn 'Adding API doc links to OMERO docs front page (rebased onto develop)' (user: hflynn)
  # PR 743 sbesson 'Propose redesign of OMERO and Bio-Formats 5.0 CI jobs' (exclude comment)
Updating be161c6..d5bcff5
Merged PRs (fast-forward):
  # PR 759 hflynn 'ticket 10030 fix - contributing file for docs repo (rebased onto develop)'
  # PR 761 rleigh-dundee 'Delegate all Makefile targets to ant'

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