Commit made by the Bioconductor Git-SVN bridge.

Consists of 2 commits.

Commit information:

SVN Revision number: 95439
Commit message:
Bump package versions prior to creating the 3.0 branch.

Committed by d.tenenbaum
Committed at: 2014-10-13T21:38:33.867451Z

SVN Revision number: 95443
Commit message:
Bumping versions after creating 3.0 release branch.

Committed by d.tenenbaum
Committed at: 2014-10-13T21:47:41.382147Z
fixed broken FAIL status flag in diff_test_helper
upp'd version
fixed a bug in responseMatrix that occurs when you don't have any genes that fail VGAM fitting
Changed version back to 1.1.0
Changed version back to 1.1.1
checked in edits to NEWS for 1.1.1 update
updated DESCRIPTION to drive upgrade of HSMMSingleCell
fixed an issue in the DESCRIPTION
reverted back to Tobit instead of cennorm
fixed a few minor problems that screw up the vignette
updated the vignette to reflect changes in HSMMSingleCell's data layout
bumped to 1.1.5, fixed a bunch of Roxygen comments to work with new HSMM layout, nearly all not run
version bump, doc updates
make sure HSMMSingleCell is >= 0.101.5
updated a bunch of man page files with expanded documentation