Make a movie

This involves changing code to save centroids of trimmed etc
For submitting a round of tmat-accel
Remove tmatrices from the index
Changed git ignore, get rid of some .sh, small updates
Update
Finagling with movie colour normalization

And a script and deleting an .o23423423
Merge branch 'master' of github.com:mpharrigan/quant-accel