Added VERBOSE flag to diagnostic printf's
New tests, bug fixed

Updated code to work on new simulated test file (1000 reads from 5 real
seas).

Multiple changes. Key fix in sub struct.
Clusters real cyano data

Updated various bugs/memory issues, so that it now successfully
clusters the real cyano data set, and has an output very close to the
matlab version (but not exactly).

Added flags for the alignment-using functions (fam_update and
lambda_update) to improve performance.
update gitignore