adds fundamentals.bib
Merge branch 'master' into motivation
adds Cyclus smallcaps command
fcs.aux was incorrect and causes a failure to build. .aux is the right option.
adds xspace dependency
makes an image directory for images
adds ABM to the glossary
edits motivation section for conciseness
improvement of the discrete objects section
abm section
modular arch."
moved the modified open figure to the implementation section.
bold words
dynamically loadable libraries implementation section closely follows katy's dissertation discussion on this topic. Some slight paraphrasing was employed to avoid self-plaigarism
fixes merge conflict
notes on discrete resources and materials and tracking
whoops, forgot to add the image
added a command for class names
rough draft paragraphs on interchangability
moved last sentence back to second p