Optimze allele object
GenotypeRecord
Merge pull request #231 from Bonder-MJ/master

Small fix in probe selection and printing
Merge branch 'vcfReaderUpdate' of https://github.com/PatrickDeelen/systemsgenetics
evenly distributed hashcode, improved createAlleles performance
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Made GenotypeIO indipendent of GeneticaLib

Allows usage of genotypeIO in GenaticaLib
Minor memory optimization
Made MAF calculator faster
Minor
Merge pull request #232 from PatrickDeelen/betterLoadingGenotypeIO

Made GenotypeIO indipendent of GeneticaLib
Attempt to fix jenkins
Merge branch 'master' of github.com:molgenis/systemsgenetics into betterLoadingGenotypeIO
Merge pull request #233 from PatrickDeelen/betterLoadingGenotypeIO

Attempt to fix jenkins
vcf parser without molgenis/genotypeio dependencies
First part ASE
replace vcf reader with vcf parser without molgenis/genotypeio dependencies
Fix error message that should not be displayed
Removed some non functional code
removed unused vars and edited comment