New Branch: Changed the files to pass Object references in order to eliminate the need to generate multiple identical objects.
New Branch: Changed the files to pass Object references in order to eliminate the need to generate multiple identical objects.
Merge origin/ObjPass into ObjPass

Conflicts:
	src/PHRED2014/PHRED2014.java
Merge origin/ObjPass into ObjPass

Conflicts:
	src/PHRED2014/PHRED2014.java
Merge pull request #2 from PHRED2014/ObjPass

Obj pass