refactored pipeline annotations
pep8 changes
added status
added status
bugfix in peekParameters - update_parameters
merging pipeline_annotations refactoring
correct mapped read counts for paired end data with missing data
added profile plots
updated pipeline_testing
go2goslim output is sorted
changes for rpy2 2.4.2
reimplementation of getProjectId - based on links
use executewait for db access
updated report
pep8 chanegs
pep8 changes
sort input for transcript selection
fixed pysam 0.8.0 linking problem
use new annotations interface
pipeline_testing changes