remove extra type control
piped log files to a log directory and appended (protein) input specific naming to the log files
modified to work with the change in log naming
Dear Tony, main code to be called from command line. -Ben
Dear Tony, main code to be called from command line. Fixed a type error -Ben
add log directory and files
ploted every point, with different colors for every peptide on a site
added line segment plotting
added probability color gradient to edges
renamed variables
commented code
Merge branch 'BenArjun' of https://github.com/MichaelGolden/FUBAR3D into BenArjun