Adding *.dox files, moving MigratingVanHove to drafts
Adding open modes to FileMaster open/close functions.
Debugging ios modes in FileMaster open functions
Updating CONTENTS and TODO files.
Modifying McMd::TrajectoryIo to allow new formats.
Adding McMd::LammpsDumpIo to factory
Small fix in LammpsDumpIo.cpp
Adding XdrFile archive classes.
Working on Xdr classes and unit tests.
Abandoned read/write for long ints. Everything else seems to work.
Updating factories.
Fixing problems with restart for multi-system sims.
Changing location of UTIL_LINK blocks in McMd code.
Cleaning up examples
Cleaning up examples
Merge branch 'devel' of github.com:/dmorse/simpatico into devel

Conflicts:
	examples/diblock/N8/mc/param
Cleaning up examples
Cleaning examples
Cleaning up worm and dihedral tests
Fixing boundary condtions in Span Hoomd(Reader/Writer)
Fixing SpAn HoomdWriter format and cleaning examples