Handle case when insight is run as a plug-in.
Do not use environment class.
Replace loci_tools by bioformats_package
Merge pull request #2054 from jburel/admin-user

Admin user.
Remove deprecated --use-mirrors
Remove flake8 --use-mirrors
Merge pull request #2061 from sbesson/travis_pypi

Travis: do not use --use-mirrors
Merge remote-tracking branch 'origin/dev_5_0' into import-fixes-insight
add media type for import logs

omitting x- prefix for http://tools.ietf.org/html/bcp178
adjust how the import log is created and linked to the fileset
add upgrade script to fix old import logs

to repeat in OMERO5.0__1 for those already on OMERO5.0__0
add import log find method to the metadata service
adjust import library to use new log finding method

Conflicts:
	components/blitz/src/ome/formats/importer/ImportLibrary.java
Load log files using new method and not file annotation.
Fix copyright and space.
permit empty lists of images to be queried for import logs
add integration testing for new metadata service method
merge dev_5_0 -D org -I include -E exclude: PR 2055 (fix #11877: move import logs to upload jobs instead of annotations)
merge dev_5_0 -D org -I include -E exclude: PR 2058 (Update dev_5_0 submodules)
merge dev_5_0 -D org -I include -E exclude: PR 2059 (Close parsed files after each indexing iteration  (fixes #11949))