whitespace
add Genome::Command::Copy
integrate Genome::Command::Copy into Genome::Command::Crud
enable copy for Genome::Library
document empty string syntax
separate the "business logic" from the command UI
switch to UR::Object copy
add copy ability to samples
update UR submodule
update for new UR API
update ur submodule for merged copy API
Merge remote-tracking branch 'origin/master' into copy-prototype
Remove old pre-5.10 way of calling coverage-stats.
Whitespace.
Call TophatAlignmentStats directly.
Unpin perl version in #! lines.
Remove obsolete comment.

This is already directly called.
Call commands directly.
Switch to direct command calls.
Whitespace.