Fixed directory error, Added error handling
Merge remote-tracking branch 'origin/development' into process
Critical bug fix
Merge branch 'process' of https://github.com/genomizer/genomizer-server into process
Minor fix in validate
Magical error fix. Headers and other rogue lines will no longer crash
the program or be left in the output file.
Merge branch 'process' of https://github.com/genomizer/genomizer-server into process
Added tests, and validation for parameters
Added ParameterValidatorTest
Fixed some errors in the checks
Merge remote-tracking branch 'origin/development' into process

Conflicts:
	src/process/classes/RawToProfileConverter.java
Fixed tests
new version of raw to profile, ratio should work
Merge branch 'process' of https://github.com/genomizer/genomizer-server into process

Conflicts:
	src/process/classes/RawToProfileConverter.java
Merge remote-tracking branch 'origin/development' into communication

Conflicts:
	src/Main.java
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