Adding README
Adding package skeleton
adding more files
script for building and testing package
Rstudio project file
modified bayou to take input from a list of branches, locations and thetas to quickly obtain weight matrix without h
aving to convert to simmap format
modified bayou to take input from a list of branches, locations and thetas to quickly obtain weight matrix without having to convert to simmap format
fixing accidential deletions
round 2
Merge branch 'parmap'

Recovering from accidental deletions
First working fully working commit that runs the full mcmc provided a parameter list
cleaning up
cleaning up
First fully working version of the package that produces mcmc results from a parameter list
Merge branch 'parmap'
cleaning up
cleaning up
cleaning up
Modified plotting functions and gelman.R
fixed Lposterior to allow for user to specify burnin proportion
Added stepping stone estimation of marginal likelihood. Modified package to allow fixed regimes specified through the prior function.