Moved from ::: to :: (where possible).
Using 'talgalili/dendextend', in install_github
Moved from ::: to :: (where possible with dendextendRcpp).
Remove "as.phylo.dendrogram" so to not force the package to depend on "ape"
Return "as.phylo.dendrogram" by adding "ape" to "Imports" in DESCRIPTION and "import" to NAMESPACE. Also fixing consistancy (using x instead of object).
Add DESCRIPTION and NEWS to git.

This is an ongoing bump to 0.12.0
fix "Unknown package 'dendroextra' in Rd xrefs" in color_branches docs.

tanglegram.dendrogram - fix warning in layout(matrix(1:3, nrow = 1), width =
  columns_width): partial argument match of 'width' to 'widths'

unbranch.phylo - fix extra parameters.
remove \link{untangle} from various .Rd (I never created this function...)
Fix various "Missing link or links in documentation object"