Revert "Revert "add known issue""

This reverts commit e103621f86e09e10b4f661b8a2ee4dde9f7c5603.
add FASTQ multithreaded parsing issue
watch out for those truncated hashfiles
update install. fix doc errors
doc/install.txt explanation
Merge pull request #286 from ged-lab/install-update

update install. fix doc errors
Merge branch 'master' into known-issues
acknowledge new known-issues.txt document
Merge pull request #284 from ged-lab/known-issues

Add known issues
Merge branch 'master' into fixes/CID_1054792

Conflicts:
	ChangeLog