Masai mod added
Readgroups added
Merge branch 'master' into masai_fseq
Merge branch 'masai_fseq' of github.com:clark-lab/ngsane into masai_fseq
Using named pipes ... wip
Masai optimizations
merge with master
Merge branch 'master' into masai_fseq
Merge branch 'new_mods' into masai_fseq

Conflicts:
	conf/sample_header.sh
File detection improved
Iterative mapping option added
Bugfixes for iterative mapping
forcesingle removed
bugfix trimlog
iterative mapping tested
Merge branch 'master' into filedetection

Conflicts:
	mods/trimmomatic.sh
quote characters replaced
Bugfix Circos mod and read pair detection
Bugfix iterative mapping
Smokebox updated