Pass along core and memory requirements for clusterk parallel
Modified SID settings to allow up to 10k coverage and lowered AF threshold to 0.5%
Merge pull request #384 from mjafin/master

Modified SID settings to allow up to 10k coverage and lowered AF thresho...
Fixes for nglims-based sample preparation: correctly specify upload directory for Galaxy, handle controls, and avoid passing empty fastq files through
Improvements for Galaxy upload: handle creation of missing Galaxy database libraries, support nglims-based specifications, avoid uploading indexes
Entry point for creating validation plots from existing CSV files