assembly_hub_constructer.pl
updated Bio namespace in POD
started working on the Moose integration
Changes
use Bio::ViennaNGS::Fasta; code cleanup
updated POD
major code refactoring: implemented features2bed in Bio::ViennaNGS::AnnoC
Multiple modifications in assembly_hub_constructer.pl script: Modfied namespace to Bio, added argument checks and fixes for variable names and messages
refactored scripts/motiffinda.pl to employ Bio::ViennaNGS::Fasta objects
refactored motiffinda.pl; updated POD
re-arranged POD
Changes
 Merge branch 'ucsc' into 'moose'

Ucsc

assembly_hub_constructor.pl is functional
Changes
scripts/README.newUCSCdb
use Bio::ViennaNGS::AnnoC Moose interface
removed get_stranded_subsequence(); added sortbed(); updated POD
Changes
Changes
v0.10_02