Merge pull request #366 from teharrison/master

updates to properly switch pipeline to use BerkleyDB in annotation stage
better test
better test also in prod
upload indicator
fix for pipeline and type templae defaults
build script for dockerfiles
newline
updated readme
workflow as string and hash
more debug info
show json error
write workflow file two times
remove debug info
remove last 6 steps if it is not production workflow
debug info
fixed number of tasks to delete
fix filename
Merge pull request #367 from wgerlach/master

workflow is transformed into hash and submitted as string.
changed index_sim_seq to use berkleydb instead of mongodb