Merge pull request #9 from jfdenton/master

multi-feature cds fix
Improved LocusPocus output, now reports all transcript types
Merge branch 'master' of https://github.com/BrendelGroup/AEGeAn
Merge pull request #10 from standage/master

Improved LocusPocus output, now reports all transcript types
added -seqids, -ignore options (see help info), also added misfits printing based on relationships