initial commit
updated POD
updated version to 0.01
output of novel_sj_from_intersect_annot_segesplit() is now a BEED6 of the splice junctions ONLY (no windows are written to the output
initial commit
Added dummy make_assembly_hub function
Added prototype make_assembly_hub function with basic parameter checks, directory structure creation and two bit fasta file conversion
updated function names
updated POD; code cleanup
added ss_isCanonical() subroutine; adjusted BED-processing subroutines to process regerence genome input
updated POD
major code refactoring
use Carp for error handling; updated Changes
updated POD
updated POD
lib/ViennaNGS/SpliceJunc.pm
use IPC::Cmd to run external tools; use Path::Class to construct paths; code and documentation cleanup
changed namespace to Bio::ViennaNGS::SpliceJunc
allow non-passed splice junctions in bed6_ss_from_rnaseq()
lib/ViennaNGS/UCSC.pm