added a new case to mrtrix_init.m to handle dt6 files that were created ...

...with dtiMakeDt6FromFsl.
I ran it on my data. But just check to make sure it doesn't break anything on your data. I don't see why it would. But Phillips is formatted very differently than GE data

On Tue, 7 Oct 2014, Ariel Rokem wrote:

> 
> In external/mrtrix/mrtrix_init.m:
> 
> > @@ -51,6 +51,19 @@
> >      dt_info = dt6;
> >  end
> >  
> > +% Check if it contains a path to the raw dwi data
> > +if ~isfield(dt_info.files,'alignedDwRaw')
> > +    % This code handles special case where the dt6.mat file was not created
> > +    % using dtiInit. For example if dtiRawFitTensorMex was run directly
> > +    dt_info = load(dt6);
> We don't really have tests for this stuff, so I am wondering: did you run it on your data? Does it work smoothly?
> … On Tue, Oct 7, 2014 at 2:00 PM, Ariel Rokem <arokem@gmail.com> wrote: > Gotcha. Makes sense. > > On Tue, Oct 7, 2014 at 2:00 PM, Jason D. Yeatman
> <notifications@github.com > > wrote: > In external/mrtrix/mrtrix_init.m: > > > @@ -51,6 +51,19 @@ > > dt_info = dt6; > > end > > > > +% Check if it contains a
> path to the raw dwi data > > +if ~isfield(dt_info.files,'alignedDwRaw') > > + % This code handles special case where the dt6.mat file was not created > > + %
> using dtiInit. For example if dtiRawFitTensorMex was run directly > > + dt_info = load(dt6); > > In case a dt6 struct was passed in I want to reload it using
> load rather > than dtiLoadDt6 > … <#148ec6a3a4ad7e96_148ec6975ce809e4_> > On Tue, 7 Oct 2014, Ariel Rokem wrote: In external/mrtrix/mrtrix_init.m: > > @@ -51,6
> +51,19 @@ > dt_info = dt6; > end > > +% Check if it contains a > path to the raw dwi data > +if ~isfield(dt_info.files,'alignedDwRaw') > + % > This code
> handles special case where the dt6.mat file was not created > + % > using dtiInit. For example if dtiRawFitTensorMex was run directly > + > dt_info =
> load(dt6); why are you loading dt6 here again? It's already being > loaded on line 49 — Reply to this email directly or view it >
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