fix installation_up_4evr structure + linux + add them to order.txt
Create README.md

added a readme
Update README.md
Fixes to regex
Updated with detailed instructions for windows installation
Update README.md
Update README.md
Update README.md
Update README.md
Update README.md
Update README.md
Merge pull request #75 from mikewesthad/master

Edits to move all outputs to the output directory + HTML bugfix
Update README.md