java-common-libs integration with new BioData library (needs checks in variant effect calculation for annotations)
Final EVS Reader
Added VariantJsonDataWriter
Some variant annotators removed (maybe temporarily)
Added Source to JsonWriter
Region start and end converted from long to int
New VariantMongoControlAnnotator. VariantVcfDataWRiter now writes Vcflines. Annotatos check if getEffects is not null before processing variants (if effect is null then calls EffectCalculator
Added VariantRetainFilter
Minor changes
Added polyphenSift Annotator
Merge branch 'feature/evs' into develop
Merge branch 'feature/jsonWriter' into develop
Merge branch 'feature/polyphenSIFTAnnot' into develop
Dependencies to Biodata repository removed
Fixed bug
Changed the urls for the Web Services
DataReader modified so that the method read() returns a list of objects
Branch develop merged into feature/new-mongo-schema
Removed useless .db file
Developers updated, mailing list URL added to POM file