Adding & updating modules and tests to enable finding of transcriptome files
Updated to reflect transcriptome additions
Merge branch 'devel' of https://github.com/wtsi-npg/npg_tracking into devel
private accessors added to avoid repeating logic. ENSEMBL_RELEASE_VERSION added to make directory structure clearer.
symbolic link entry removed
pulled latest from wtsi-devel; transcriptome utility - POD, PBD, indentation fixes
directory structures now generated on the fly in /tmp and xml files copied over
mouse example
mouse example
for mouse example
Merge pull request #1 from mgcam/transcriptome

transcriptome utility - POD, PBD, indentation fixes
Merge branch 'transcriptome' of https://github.com/mgcam/npg_tracking into mgcam-transcriptome
Merge pull request #148 from mgcam/devel

tests clean-up; unused code removed
Merge branch 'transcriptome' of https://github.com/jidur/npg_tracking into transcriptome
3 xml files added which are copied by 10-transcriptome.t to tmp dir
removed transcriptomes subdirectory as now in /tmp and updated MANIFEST
Merge pull request #149 from mgcam/devel

provide consitent perl environment at server start-up time
Merge pull request #1 from wtsi-npg/devel

merge changes from wtsi-npg
additions to prevent uninitialised warning if no reference genome set
reference genome removed for test