Updated LDA API

Added TopicDocMatrix, TopicTermMatrix, TopicTopTerms, TopicTopDocs, TopicCovariance.
Recompiled CorpusWriter.jar
Import scripts now check for app/data/x (instead of app folder).
Updated Makefile to ensure CorpusWriter depends on the underlying *.java file.
Updated Core.py

Use 'origin' parameter.
Is now a parent class of all other APIs.
Updated Corpus API

Added TermProbs, TermCoProbs, TermPMI
Removed unused test.txt
Added TextSearch and Document to Corpus API.
Updated GroupInABox and CovariateChart APIs.
Updated Makefile to include more demo combinations.
Fixed how vocabulary is generated for GIB (needs to be the union of top terms in all topics).
Fixed the output format of TopTerms and TopDocs.
Merge branch 'master' of github.com:uwdata/termite-data-server