first version
collect all peaks under transcript
associate only peaks intersecting exons on UTR
release
mTOR fold changes are now outside of gene data loader
don't drop transcripts with zero expression, get all transcripts expressions and print only them; made script to combine expression into file with another transcript data
another source directories
read cages from gzip
use chomp and rstrip instead of strip
Peaks work with mouse identifiers. ATTENTIONgit diff lib/peak.rbgit diff lib/peak.rb Human identifiers disabledgit diff lib/peak.rb!
remove duplicated method
don't expand transcript by peaks outside of given region
executable to cut cages (and optionally a sequence) from a bed file
gitignore
executable to extract a genome sequence by its annotation
add simply postprocessing tools to cut zero (and almost zero) tails and to extract only part of infos
add (uncompleted) bed-file transformer which creates a truncated copies of bed files containing only a region of interest
extract 5_utr with cages