Update TODO.md
Merge branch 'user-cuts' of https://github.com/ls-cwi/xheinz into user-cuts
Updated TODO file
Making things compile on mac
New parameter root time limit
New results
various tidbits here and there, modifications in solution 'root' computation
updated results with the one use for Recomb/Bioinfo submission
addition of the Cytospace files
addition of Snakefile