Changes to support parsing from nway.any
Refactored, cleaned and prepared for nway.any parsing instead of individual reports
Actually call extract_consequences with data
Added a new observed case (correlated in substitution)
Remove debugging & provide stats
Make a connection the the database and store the mapping data
Support to get stats in
Method and use of the method to chunk a list into smaller bits
Push in the chunked list not the actual list and adjust chunk size
A way to diff conserved calls & lower case classes for consistency
Loop was incorrectly indented
Lower chunking list size
Do not store un-interesting positions
Do not store uninteresting positions 6.4M->2.2M->1.0M documents
Checks in regards to what is going into the variant DB
Updated some query methods
Modified the id in variants to match that of ref_feat
Added a relation between variants and ref_feat for much faster selections with table joins
python is not javascript, fixed syntax
Updated/test fixes
Merge branch 'nway-any'

* nway-any:
  Updated some query methods
  Checks in regards to what is going into the variant DB
  Do not store uninteresting positions 6.4M->2.2M->1.0M documents
  Do not store un-interesting positions
  Lower chunking list size
  Loop was incorrectly indented
  A way to diff conserved calls & lower case classes for consistency
  Push in the chunked list not the actual list and adjust chunk size
  Method and use of the method to chunk a list into smaller bits
  Support to get stats in
  Make a connection the the database and store the mapping data
  Remove debugging & provide stats
  Added a new observed case (correlated in substitution)
  Actually call extract_consequences with data
  Refactored, cleaned and prepared for nway.any parsing instead of individual reports
  Changes to support parsing from nway.any

Conflicts:
	src/BanzaiDB/core.py
	src/BanzaiDB/fabfile/variants.py
	src/BanzaiDB/misc.py