New classes that will be related to VariantEffect
New VariantEffect beans filled with constructors, getters and setters
Biodata tools adapted to new VariantEffect classes
Included all members of classes related to VariantEffect
Initialization of ConsequenceType numerical attributes to -1
Merging branch 'develop' into 'feature/consequence-type'
VariantEffect renamed to VariantAnnotation, ConsequenceType renamed to VariantEffect, new class Gene
Set of genes added to VariantAnnotation
Added opencb.datastore to pom.xml
The VariantGeneAnnotator retrieves data from Cellbase instead of Variant Effect'
Fixed bug in VariantGeneAnnotator
models: core, pathway, protein and variation models from Cellbase have been added
models: Old GenomicVariantEffectPredictor class removed
formats: UniprotParser added
formats: Graph format Dot has been added
models: Field _id removed from Gene collection and DAMAGING renamed to PROBABLY_DAMAGING in ProteinSubstitutionScores
Insert original VCF line in the Variant data model
Compress the VCF line (approx 60% less disk usage)
Merging branch 'develop' into 'feature/consequence-type'
New VariantAnnotation classes connected with CellBase web services
New VariantEffect class working with the genomic/variant/consequence_type from CellBase