[SPARK-3945]Properties of hive-site.xml is invalid in running the Thrift JDBC server

Write properties of hive-site.xml to HiveContext when initilize session state in SparkSQLEnv.scala.

The method of SparkSQLEnv.init() in HiveThriftServer2.scala can not write the properties of hive-site.xml to HiveContext. Such as: add configuration property spark.sql.shuffle.partititions in the hive-site.xml.

Author: luogankun <luogankun@gmail.com>

Closes #2800 from luogankun/SPARK-3945 and squashes the following commits:

3679efc [luogankun] [SPARK-3945]Write properties of hive-site.xml to HiveContext when initilize session state In SparkSQLEnv.scala
[SPARK-3969][SQL] Optimizer should have a super class as an interface.

Some developers want to replace `Optimizer` to fit their projects but can't do so because currently `Optimizer` is an `object`.

Author: Takuya UESHIN <ueshin@happy-camper.st>

Closes #2825 from ueshin/issues/SPARK-3969 and squashes the following commits:

abbc53c [Takuya UESHIN] Re-rename Optimizer object.
4d2e1bc [Takuya UESHIN] Rename Optimizer object.
9547a23 [Takuya UESHIN] Extract abstract class from Optimizer for developers to be able to replace Optimizer.
[SPARK-3940][SQL] Avoid console printing error messages three times

If  wrong sql,the console print error one times。
eg：
<pre>
spark-sql> show tabless;
show tabless;
14/10/13 21:03:48 INFO ParseDriver: Parsing command: show tabless
............
	at org.apache.spark.sql.hive.thriftserver.SparkSQLCLIDriver.processCmd(SparkSQLCLIDriver.scala:274)
	at org.apache.hadoop.hive.cli.CliDriver.processLine(CliDriver.java:413)
	at org.apache.spark.sql.hive.thriftserver.SparkSQLCLIDriver$.main(SparkSQLCLIDriver.scala:209)
	at org.apache.spark.sql.hive.thriftserver.SparkSQLCLIDriver.main(SparkSQLCLIDriver.scala)
Caused by: org.apache.hadoop.hive.ql.parse.ParseException: line 1:5 cannot recognize input near 'show' 'tabless' '<EOF>' in ddl statement

	at org.apache.hadoop.hive.ql.parse.ParseDriver.parse(ParseDriver.java:193)
	at org.apache.hadoop.hive.ql.parse.ParseDriver.parse(ParseDriver.java:161)
	at org.apache.spark.sql.hive.HiveQl$.getAst(HiveQl.scala:218)
	at org.apache.spark.sql.hive.HiveQl$.createPlan(HiveQl.scala:226)
	... 47 more
Time taken: 4.35 seconds
14/10/13 21:03:51 INFO CliDriver: Time taken: 4.35 seconds
</pre>

Author: wangxiaojing <u9jing@gmail.com>

Closes #2790 from wangxiaojing/spark-3940 and squashes the following commits:

e2e5c14 [wangxiaojing] sql Print the error code three times
Update Building Spark link.
[SPARK-3958] TorrentBroadcast cleanup / debugging improvements.

This PR makes several changes to TorrentBroadcast in order to make
it easier to reason about, which should help when debugging SPARK-3958.
The key changes:

- Remove all state from the global TorrentBroadcast object.  This state
  consisted mainly of configuration options, like the block size and
  compression codec, and was read by the blockify / unblockify methods.
  Unfortunately, the use of `lazy val` for `BLOCK_SIZE` meant that the block
  size was always determined by the first SparkConf that TorrentBroadast was
  initialized with; as a result, unit tests could not properly test
  TorrentBroadcast with different block sizes.

  Instead, blockifyObject and unBlockifyObject now accept compression codecs
  and blockSizes as arguments.  These arguments are supplied at the call sites
  inside of TorrentBroadcast instances.  Each TorrentBroadcast instance
  determines these values from SparkEnv's SparkConf.  I was careful to ensure
  that we do not accidentally serialize CompressionCodec or SparkConf objects
  as part of the TorrentBroadcast object.

- Remove special-case handling of local-mode in TorrentBroadcast.  I don't
  think that broadcast implementations should know about whether we're running
  in local mode.  If we want to optimize the performance of broadcast in local
  mode, then we should detect this at a higher level and use a dummy
  LocalBroadcastFactory implementation instead.

  Removing this code fixes a subtle error condition: in the old local mode
  code, a failure to find the broadcast in the local BlockManager would lead
  to an attempt to deblockify zero blocks, which could lead to confusing
  deserialization or decompression errors when we attempted to decompress
  an empty byte array.  This should never have happened, though: a failure to
  find the block in local mode is evidence of some other error.  The changes
  here will make it easier to debug those errors if they ever happen.

- Add a check that throws an exception when attempting to deblockify an
  empty array.

- Use ScalaCheck to add a test to check that TorrentBroadcast's
  blockifyObject and unBlockifyObject methods are inverses.

- Misc. cleanup and logging improvements.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #2844 from JoshRosen/torrentbroadcast-bugfix and squashes the following commits:

1e8268d [Josh Rosen] Address Reynold's review comments
2a9fdfd [Josh Rosen] Address Reynold's review comments.
c3b08f9 [Josh Rosen] Update TorrentBroadcast tests to reflect removal of special local-mode optimizations.
5c22782 [Josh Rosen] Store broadcast variable's value in the driver.
33fc754 [Josh Rosen] Change blockify/unblockifyObject to accept serializer as argument.
618a872 [Josh Rosen] [SPARK-3958] TorrentBroadcast cleanup / debugging improvements.
Merge branch 'master' of git://git.apache.org/spark into spark-sql-dsl-improvement2
[SPARK-4023] [MLlib] [PySpark] convert rdd into RDD of Vector

Convert the input rdd to RDD of Vector.

cc mengxr

Author: Davies Liu <davies@databricks.com>

Closes #2870 from davies/fix4023 and squashes the following commits:

1eac767 [Davies Liu] address comments
0871576 [Davies Liu] convert rdd into RDD of Vector
replace awaitTransformation with awaitTermination in scaladoc/javadoc

Author: Holden Karau <holden@pigscanfly.ca>

Closes #2861 from holdenk/SPARK-4015-Documentation-in-the-streaming-context-references-non-existent-function and squashes the following commits:

081db8a [Holden Karau] fix pyspark streaming doc too
0e03863 [Holden Karau] replace awaitTransformation with awaitTermination
[SPARK-4035] Fix a wrong format specifier

Just found a typo. Should not use "%f" for Long.

Author: zsxwing <zsxwing@gmail.com>

Closes #2875 from zsxwing/SPARK-4035 and squashes the following commits:

ce347e2 [zsxwing] Fix a wrong format specifier
[SPARK-4020] Do not rely on timeouts to remove failed block managers

If an executor fails without being scheduled to run any tasks, then `DAGScheduler` won't notify `BlockManagerMasterActor` that the associated block manager should be removed. Instead, the associated block manager will be expired only after a few rounds of heartbeat timeouts. In terms of removal treatment, there should really be no distinction between executors that have been scheduled tasks and those that have not.

The fix, then, is to add all known executors to `TaskSchedulerImpl`'s `activeExecutorIds` whether or not it has been scheduled a task. In fact, the existing comment above `activeExecutorIds` is
```
// Which executor IDs we have executors on
val activeExecutorIds = new HashSet[String]
```
not  "Which executors have been scheduled tasks thus far."

Author: Andrew Or <andrewor14@gmail.com>

Closes #2865 from andrewor14/active-executors and squashes the following commits:

ff3172b [Andrew Or] Add all known executors to `activeExecutorIds`
SPARK-3770: Make userFeatures accessible from python

https://issues.apache.org/jira/browse/SPARK-3770

We need access to the underlying latent user features from python. However, the userFeatures RDD from the MatrixFactorizationModel isn't accessible from the python bindings. I've added a method to the underlying scala class to turn the RDD[(Int, Array[Double])] to an RDD[String]. This is then accessed from the python recommendation.py

Author: Michelangelo D'Agostino <mdagostino@civisanalytics.com>

Closes #2636 from mdagost/mf_user_features and squashes the following commits:

c98f9e2 [Michelangelo D'Agostino] Added unit tests for userFeatures and productFeatures and merged master.
d5eadf8 [Michelangelo D'Agostino] Merge branch 'master' into mf_user_features
2481a2a [Michelangelo D'Agostino] Merged master and resolved conflict.
a6ffb96 [Michelangelo D'Agostino] Eliminated a function from our first approach to this problem that is no longer needed now that we added the fromTuple2RDD function.
2aa1bf8 [Michelangelo D'Agostino] Implemented a function called fromTuple2RDD in PythonMLLibAPI and used it to expose the MF userFeatures and productFeatures in python.
34cb2a2 [Michelangelo D'Agostino] A couple of lint cleanups and a comment.
cdd98e3 [Michelangelo D'Agostino] It's working now.
e1fbe5e [Michelangelo D'Agostino] Added scala function to stringify userFeatures for access in python.
[SPARK-3994] Use standard Aggregator code path for countByKey and countByValue

See [JIRA](https://issues.apache.org/jira/browse/SPARK-3994) for more information. Also adds
a note which warns against using these methods.

Author: Aaron Davidson <aaron@databricks.com>

Closes #2839 from aarondav/countByKey and squashes the following commits:

d6fdb2a [Aaron Davidson] Respond to comments
e1f06d3 [Aaron Davidson] [SPARK-3994] Use standard Aggregator code path for countByKey and countByValue
SPARK-3568 [mllib] add ranking metrics

Add common metrics for ranking algorithms (http://www-nlp.stanford.edu/IR-book/), including:
 - Mean Average Precision
 - Precisionn: top-n precision
 - Discounted cumulative gain (DCG) and NDCG

The following methods and the corresponding tests are implemented:

```
class RankingMetrics[T](predictionAndLabels: RDD[(Array[T], Array[T])]) {
  /* Returns the precsionk for each query */
  lazy val precAtK: RDD[Array[Double]]

  /**
   * param k the position to compute the truncated precision
   * return the average precision at the first k ranking positions
   */
  def precision(k: Int): Double

  /* Returns the average precision for each query */
  lazy val avePrec: RDD[Double]

  /*Returns the mean average precision (MAP) of all the queries*/
  lazy val meanAvePrec: Double

  /*Returns the normalized discounted cumulative gain for each query */
  lazy val ndcgAtK: RDD[Array[Double]]

  /**
   * param k the position to compute the truncated ndcg
   * return the average ndcg at the first k ranking positions
   */
  def ndcg(k: Int): Double
}
```

Author: coderxiang <shuoxiangpub@gmail.com>

Closes #2667 from coderxiang/rankingmetrics and squashes the following commits:

d881097 [coderxiang] update doc
14d9cd9 [coderxiang] remove unexpected files
d7fb93f [coderxiang] style change and remove ignored files
f113ee1 [coderxiang] modify doc for displaying superscript and subscript
f626896 [coderxiang] improve doc and remove unnecessary computation while labSet is empty
be6645e [coderxiang] set the precision of empty labset to 0.0
d64c120 [coderxiang] add logWarning for empty ground truth set
dfae292 [coderxiang] handle empty labSet for map. add test
62047c4 [coderxiang] style change and add documentation
f66612d [coderxiang] add additional test of precisionAt
b794cb2 [coderxiang] move private members precAtK, ndcgAtK into public methods. style change
77c9e5d [coderxiang] set precAtK and ndcgAtK as private member. Improve documentation
5f87bce [coderxiang] add API to calculate precision and ndcg at each ranking position
b7851cc [coderxiang] Use generic type to represent IDs
e443fee [coderxiang] change style and use alternative builtin methods
3a5a6ff [coderxiang] add ranking metrics
[SQL]redundant methods for broadcast

redundant methods for broadcast in ```TableReader```

Author: wangfei <wangfei1@huawei.com>

Closes #2862 from scwf/TableReader and squashes the following commits:

414cc24 [wangfei] unnecessary methods for broadcast
Merge branch 'master' of git://git.apache.org/spark into spark-sql-dsl-improvement2
SPARK-1813. Add a utility to SparkConf that makes using Kryo really easy

Author: Sandy Ryza <sandy@cloudera.com>

Closes #789 from sryza/sandy-spark-1813 and squashes the following commits:

48b05e9 [Sandy Ryza] Simplify
b824932 [Sandy Ryza] Allow both spark.kryo.classesToRegister and spark.kryo.registrator at the same time
6a15bb7 [Sandy Ryza] Small fix
a2278c0 [Sandy Ryza] Respond to review comments
6ef592e [Sandy Ryza] SPARK-1813. Add a utility to SparkConf that makes using Kryo really easy
Update JavaCustomReceiver.java

Changed the usage string to correctly reflect the file name.

Author: Karthik <karthik.gomadam@gmail.com>

Closes #2699 from namelessnerd/patch-1 and squashes the following commits:

8570e33 [Karthik] Update JavaCustomReceiver.java
Merge branch 'master' of git://git.apache.org/spark into spark-sql-dsl-improvement2