Output handling changed completely:
- temporary pipeline data are written to a separate HDF5 file
-> api and modules were adapted in all languages

modified:   .gitignore
modified:   src/matlab/+jterator/+api/+io/build_hdf5.m
modified:   src/matlab/+jterator/+api/+io/check_input_args.m
modified:   src/matlab/+jterator/+api/+io/get_handles.m
modified:   src/matlab/+jterator/+api/+io/read_input_args.m
modified:   src/matlab/+jterator/+api/+io/read_input_values.m
modified:   src/matlab/+jterator/+api/+io/write_output_args.m
new file:   src/matlab/+jterator/+api/+io/write_output_tmp.m
modified:   src/matlab/+jterator/+api/.DS_Store
modified:   src/python/jterator/api/io.py
modified:   src/r/jterator/api/io.R
new file:   tests/mock/testPipe_example/figures/IllumCorr_jt.pdf
new file:   tests/mock/testPipe_example/figures/MeasurePrimary_jt.pdf
new file:   tests/mock/testPipe_example/figures/Plot_jt.pdf
new file:   tests/mock/testPipe_example/figures/README
modified:   tests/mock/testPipe_example/handles/IdentifyPrimary.handles
modified:   tests/mock/testPipe_example/handles/MeasurePrimary.handles
modified:   tests/mock/testPipe_example/handles/Plot.handles
modified:   tests/mock/testPipe_example/handles/PrimeRawData.handles
modified:   tests/mock/testPipe_example/modules/IdentifyPrimary_jt.m
modified:   tests/mock/testPipe_example/modules/IllumCorr_jt.m
modified:   tests/mock/testPipe_example/modules/MeasurePrimary_jt.py
modified:   tests/mock/testPipe_example/modules/Plot_jt.R
modified:   tests/mock/testPipe_example/modules/PrimeRawData_jt.m
new file:   tests/mock/testPipe_example/modules/foo.m