Move to ReStructured Text for README. Adds detail to Requirements section, and adds Source section.
Adds support for wheel builds.
Switches to setuptools from distutils for build setup.

Version now 1.1.1
Adds data_files directive to setup.
Updates old classifier.
Updates imports of qiime-tools modules to reflect current project structure.
Fixes missed error in copying of otu_name_biom(biom_row).

Now returns a value.
Switch to appropriate function name: otu_name_biom instead of otu_name

PEP8 variable name fix.
Minor fixes and cleanup to sanger_qiimify.py

Removes version parameter, unused return from handle_program_options.
Adds proper #! to allow script to be run by python listed in env.
Adds script filter_keep_otus_by_sample.py

This script allows the opposite of the QIIME script filter_otus_by_sample.py.
Instead of listing the Sample IDs that will be removed from the new file, this
script allows users to list which Sample IDs will be kept in the new file; often
a smaller list than the negative.
Adds script biom_phyla_summary.py

Takes in a BIOM abundance table and prints out a summary of the percent
abundance of the top 20 Families, Genera, and Species.

Also currently lists the percent abundance of important species in the oral
cavity (color complexes). This will be made an option in a later release.
Along with a more generic ability to pass in a list of any phylogenetic level
or specific OTU.