initial implementation of site cube extension with boundary
transformatons implemented. Crashes.
alot of changes and index normalization going on. Segfaults in some site
that has been deleted but is still in use. Unsure of what's going on.
Boundary transformation is checked and seems to work fine. Should build
a unit test for checking site initialization for all boundaries before I
continue debugging this mess.
cleaned out some old jazz and made the new test but didn't implement it
yet.
fixed a bug where unsigned ints were set to negative values in getsite.
test for sitebox and neighborhood setup implemented and passed. still
crashes.
fixed a bug where the blocked coordinate test for boundaries could not
work because of an additional addition to the transformed value.
got a test up thats failing. Need a break. Seems related to NULL sites
when not all of the coordinates are blocked.
fixed a bug where almost none of the boundaries were handled. Now they
all are. Still segmentation fault on setting up neighborhood.
boundary site locations was declared all on the stack. Rewrote to use
pointers and test passed. Still get segfault when initializing
neighborhood afterwards tho.
site test with additional resets passed no errors.
tests are starting to work again. Redid how "reset" paremeter functions
worked with prereqs and consequences. You are now responsible for
handling them, but the methods let you know if you dont. This allows for
changing multiple parameters without handling the consequences several
times.
missed an initialization of boundaries. Fixed minor issues. all misc
tests pass.
Found some return statements rendering reaction tests useless. Dont even
know if they used to work. Need to investigate.
fixed the reactionvectorupdate test. Passed.
added minor fixes. all tests pass. Break out the champagne, it's been
one hell of a ride...
HALLELUJA! Neighborhood storage cleared out. Memory usage down from 32GB
to 16GB to 4GB and now down to 200MB. Oh yeah! All tests pass, great
success, vacation inc.
udated ignis