Bits lost during the merge
Merge pull request #2 from aoehmichen/master

Bits lost during the merge.
Merge branch 'origin/master'
Previous commit missed the proper dependancies
removing search, biomart, transmart-java to transmart-extension plugins
moved conflicted files to the respective plugin in transmart-extenstion
Removed conflict markers.
removed target and target-eclipse from archive
added 'standard' .gitignore
removed eclipse generated files
Merge pull request #1 from transmart/v0.2_hackathon

V0.2 hackathon